function(openControlledOntologyAcc, child) {
const { tagName, textContent } = child;
// using He.decode here, because some GPML at some point didn't use UTF-8
// for things like author names.
const textContentDecoded = He.decode(textContent);
const key = BIOPAX_TO_PVJSON.hasOwnProperty(tagName)
? BIOPAX_TO_PVJSON[tagName]
: tagName.replace(/^bp:/, "").toLowerCase();
openControlledOntologyAcc[key] = textContentDecoded;
return openControlledOntologyAcc;
},
opts => {
const parsed = parseSrcSet(he.decode(opts.srcset));
const firstCandidate: { url?: string } = parsed[0];
const { url } = firstCandidate || { url: null };
let encodedUrl = '';
// Must re-encode url prior to comparison with expected string.
if (url !== null) {
encodedUrl = he.encode(url);
} else {
encodedUrl = '';
}
expect(encodedUrl).toStrictEqual(opts.expect);
},
function(publicationXrefAcc, child) {
const { tagName, textContent } = child;
// using He.decode here, because some GPML at some point didn't use UTF-8
// for things like author names.
const textContentDecoded = He.decode(textContent);
const key = BIOPAX_TO_PVJSON[tagName];
if (
[
"xrefIdentifier",
"xrefDataSource",
"title",
"source",
"year"
].indexOf(key) > -1
) {
publicationXrefAcc[key] = textContentDecoded;
} else {
publicationXrefAcc[key].push(textContentDecoded);
}
return publicationXrefAcc;
},
expect(() => {
parseSrcSet(he.decode(opts.srcset));
}).toThrow(Error);
function decodeIfNotEmpty(input) {
return isEmpty(input) ? input : decode(input);
}